nextflow

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How to reuse the same process twice in within the same module in nextflow dsl2, but saving the output in a different name?

Reusing Processes in Nextflow DSL 2 with Different Output Names In Nextflow DSL 2 reusing the same process definition multiple times within a module is a common

How to reuse the same process twice in within the same module in nextflow dsl2, but saving the output in a different name?

Nextflow methylseq on multiple fastq files per sample: how to concatenate files

A Comprehensive Guide to Concatenating Multiple FASTQ Files per Sample in Nextflow Methylseq Nextflow is a powerful workflow management system that allows data

Nextflow methylseq on multiple fastq files per sample: how to concatenate files

ERROR ~ No such variable: still struggling with nextflow's channels behavior

Troubleshooting the No Such Variable Error in Nextflows Channels Behavior Nextflow is a powerful workflow management system that allows users to define and run

ERROR ~ No such variable: still struggling with nextflow's channels behavior

Using Nextflow getting "java.net.SocketTimeoutException: Read timed out"

Troubleshooting java net Socket Timeout Exception Read timed out in Nextflow When working with Nextflow a popular workflow management system users may encounter

Using Nextflow getting "java.net.SocketTimeoutException: Read timed out"

How to download files using REST API and process them with Nextflow

Downloading Files with REST APIs and Processing them with Nextflow Nextflow is a powerful workflow management system that enables you to streamline complex data

How to download files using REST API and process them with Nextflow

Passing specific outputs between nextflow processes

Mastering Data Flow in Nextflow Pipelines Passing Specific Outputs Between Processes Nextflow a powerful workflow management system allows you to build complex

Passing specific outputs between nextflow processes

Docker build not detecting ENV variables from Dockerfile

Why Docker Build Fails to Detect ENV Variables on M1 Macs and How to Fix It Building Docker images on an M1 Mac can be a bit trickier than on a Linux system due

Docker build not detecting ENV variables from Dockerfile

Concatenate group-wise in a non-blocking way in Nextflow

Concatenating Group wise in a Non Blocking Way in Nextflow This article will explore how to achieve group wise concatenation in a non blocking manner within a N

Concatenate group-wise in a non-blocking way in Nextflow

--shm_size change for Docker in Nextflow pipeline: containerOptions not seeming to work

h1 Troubleshooting Shared Memory Size in Docker for Nextflow Pipelines h1 p When running computationally intensive tasks within Docker containers in a Nextflow

--shm_size change for Docker in Nextflow pipeline: containerOptions not seeming to work